PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52415.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Protein Properties

Length: 939aa MW: 104264 Da PI: 8.5082

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.5	5.9e-19	428	528	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++lv PKA52415.1 428 FEKMLSASDAGRIGRLVLPKKCAEAYfpliS--QPEGLPLKMQDANGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKLV 522 89************************654..445667***********99899999999.*******************987.777788 PP EEEE-S CS B3 94 vkvfrk 99 ++++++ PKA52415.1 523 MGFRKA 528 777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence
MQNYFSASLK FLLNSRLLRF LARTPKHDLS LFDHLLSPFR SSPHDLGAAR RDFLKILVYA 60 AWRRSVYLRA MSSSSAAAGP KICFNVHCKD AITDQVRRKG WKLRSGEFSE LCERCYSTFD 120 KGSFCETFHS DATGWRKCES CGKRIHCGCI VSIPSYMLLD AGGVECMVCV RKAYSSVPNQ 180 IWSPPVTLSP QVSERSKDFS VKSWNQAVSS YPGQWRHPAN IWNSSSIQSD LHQRLSFEFD 240 RPNAERLLAG TRSSFSAQEK KAEELSERIT SGGISHVVRD RYGDNDSMSG RKGTTSEACS 300 TGPSGVNFEA RQSSQGNPST ILKGDSSALL IGLAAPFSGI NETSDPARIS TTQPHRQAAP 360 SSLSKQFYPN TTNSVESCNE SQSQTRNGRG RADPKARSHL LPRYWPRITD QELQKISGDS 420 NSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPLISQP EGLPLKMQDA NGKEWVFQFR 480 FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRIDPEGK LVMGFRKASN TPNSEQENHA 540 AKAGDSSSVT SHVKTNAMDF IANLPLRPHK GSTESRNQSN TADRASWARN DKGGFIQKDG 600 SIPKSSHNHF KRKGGNLGSK SKRLRIENEE SIELNLTWEE AQVLLRPASD EGATVISVEG 660 YDFEEFEEAP VLGMPTYFAK NQDGDVNSRW GQCEDCSKWR KLPLDALLRH RWTCSDNKWD 720 SDRSSCSDPQ EISSDIAHLL PTKTGSSKRS KVKVENETVE VSDGLDTLAN LAILGEGESL 780 PASSQATTKH PRHRAGCTCI VCIQPPSGKG PKHKQTCTCN VCLTVKRRFR TLMLRREKRQ 840 SEKEAEGVGN RKKEDLPNNQ PEAMAPPAAL VLEHMEPSNS LEMPMANNDV ANDECEKKWA 900 APSPIKTRID LNIQPEREEE PSPVAEAGSL IRPFQGTVD

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence

MQNYFSASLK FLLNSRLLRF LARTPKHDLS LFDHLLSPFR SSPHDLGAAR RDFLKILVYA  60
AWRRSVYLRA MSSSSAAAGP KICFNVHCKD AITDQVRRKG WKLRSGEFSE LCERCYSTFD  120
KGSFCETFHS DATGWRKCES CGKRIHCGCI VSIPSYMLLD AGGVECMVCV RKAYSSVPNQ  180
IWSPPVTLSP QVSERSKDFS VKSWNQAVSS YPGQWRHPAN IWNSSSIQSD LHQRLSFEFD  240
RPNAERLLAG TRSSFSAQEK KAEELSERIT SGGISHVVRD RYGDNDSMSG RKGTTSEACS  300
TGPSGVNFEA RQSSQGNPST ILKGDSSALL IGLAAPFSGI NETSDPARIS TTQPHRQAAP  360
SSLSKQFYPN TTNSVESCNE SQSQTRNGRG RADPKARSHL LPRYWPRITD QELQKISGDS  420
NSVITPLFEK MLSASDAGRI GRLVLPKKCA EAYFPLISQP EGLPLKMQDA NGKEWVFQFR  480
FWPNNNSRMY VLEGVTPCIQ SMQLQAGDTV TFSRIDPEGK LVMGFRKASN TPNSEQENHA  540
AKAGDSSSVT SHVKTNAMDF IANLPLRPHK GSTESRNQSN TADRASWARN DKGGFIQKDG  600
SIPKSSHNHF KRKGGNLGSK SKRLRIENEE SIELNLTWEE AQVLLRPASD EGATVISVEG  660
YDFEEFEEAP VLGMPTYFAK NQDGDVNSRW GQCEDCSKWR KLPLDALLRH RWTCSDNKWD  720
SDRSSCSDPQ EISSDIAHLL PTKTGSSKRS KVKVENETVE VSDGLDTLAN LAILGEGESL  780
PASSQATTKH PRHRAGCTCI VCIQPPSGKG PKHKQTCTCN VCLTVKRRFR TLMLRREKRQ  840
SEKEAEGVGN RKKEDLPNNQ PEAMAPPAAL VLEHMEPSNS LEMPMANNDV ANDECEKKWA  900
APSPIKTRID LNIQPEREEE PSPVAEAGSL IRPFQGTVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	826	839	KRRFRTLMLRREKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-150	B3 family protein