PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA52361.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 441aa MW: 49669.8 Da PI: 6.294 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.7 | 1.5e-21 | 16 | 71 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k PKA52361.1 16 KKRYHRHTPRQIQELEAMFKMCPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71 688999***********************************************998 PP | |||||||
2 | START | 103 | 5e-33 | 160 | 265 | 101 | 206 |
XX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHH CS START 101 lsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwv 197 sp+vp R+f f+Ry++q + g w+i+dvS+d ++ + +++v+ +lpSg+li+++sng+sk++wveh++ +++ h+l++ lv sg+a+ga +wv PKA52361.1 160 SSPVVPsREFCFLRYCQQFEPGLWAIADVSIDFAKDTQ-LPPCVK-SRLPSGCLIREMSNGYSKIVWVEHMEIEEKKQtHQLYHDLVDSGVAFGAHRWV 256 58**********************************99.8*****.89*************************988766******************** PP HHTXXXXXX CS START 198 atlqrqcek 206 atlqr ce+ PKA52361.1 257 ATLQRMCER 265 *******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence |
MDSGDEQDLT ESQRKKKRYH RHTPRQIQEL EAMFKMCPHP DEKQRMQLSR DLGLEPRQIK 60 FWFQNRRTQM KARPEIERPM MEQLATHAMQ ELIRLAQTDE PFWTRVGGDE REVLNLEMYD 120 RIFPRPVQQL RSPDAHVEAS RDSGDVIMNS LVLVDMFMES SPVVPSREFC FLRYCQQFEP 180 GLWAIADVSI DFAKDTQLPP CVKSRLPSGC LIREMSNGYS KIVWVEHMEI EEKKQTHQLY 240 HDLVDSGVAF GAHRWVATLQ RMCERIACLM VTGNSPGDLF LLKWDVLSYG KGVVEITRIG 300 SGQNPGNCIS LFRVRNYIMS NESMFILQES CTDSSGSLVV YASVDYTSVN IAMSGEDPSY 360 IPLLPSGFVI LPDGRPGTGS FASSSSKPMG GSSGSILTVA FQIMVSSLPS AKLNLESVAT 420 VNHLIGATVQ HIKTAMGTSD T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-60 | HD-ZIP family protein |