PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52357.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MIKC_MADS

Protein Properties

Length: 185aa MW: 21461.7 Da PI: 10.3376

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52357.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	8.8e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev ++ifs tg+ly+yss PKA52357.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVIFSGTGRLYDYSS 59 8***********************************************96 PP
2	K-box	82	1.3e-27	71	168	3	98
K-box 3 kssgks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 k++g+s +++++a +q+e+a+L+++++nLq++qR+l Ge+L+ Ls+k+Lq+Le++Le sl+ +R kK+++l+++i+el +k +++en +L kkl PKA52357.1 71 KAKGEShmTTASEARIWQEEAANLRQQLQNLQENQRKLTGEELSGLSVKDLQNLENRLEMSLRGVRMKKEQILKDEIQELNRKGYLVHQENLELYKKL 168 5555555678899999******************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVIFSG TGRLYDYSST 60 SMKSVFDRYK KAKGESHMTT ASEARIWQEE AANLRQQLQN LQENQRKLTG EELSGLSVKD 120 LQNLENRLEM SLRGVRMKKE QILKDEIQEL NRKGYLVHQE NLELYKKLNL IQENLELYKK 180 VLNKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-81	MIKC_MADS family protein