PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA52052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 226aa MW: 25411.9 Da PI: 6.1772 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.4e-15 | 114 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ ++G g+W++I+r++ +Rt+ q+ s+ qk+ PKA52052.1 114 AWTEEEHRLFLQGLDKYGRGDWRSISRHFVVTRTPTQVASHAQKF 158 6******************************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MENASSGCSW SWDEEKAFEN ALHVYSDDCN RRWESIAAVV GKNVEEVVYH YHLLEQDLDA 60 IESDLVPTPI YSSSSVTMDE SANDGEDSRN NEHGSGQERG KGSRSEQERR RGIAWTEEEH 120 RLFLQGLDKY GRGDWRSISR HFVVTRTPTQ VASHAQKFFI RMNSRNRERR RSSIHDIMTP 180 GHGHVPVTAA MSSSSEPLLP LADPGKLGTG TGQTVNVPLG SFQIRQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-58 | MYB family protein |