PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51951.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 584aa MW: 64650.8 Da PI: 8.5294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58	2.2e-18	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+++ g++Wk+Ia+ ++ Rt+ qc +rwqk+l PKA51951.1 59 KGGWTPEEDETLRRAVELHKGRSWKKIAESIP-DRTEVQCLHRWQKVL 105 688***************************.**********986 PP
2	Myb_DNA-binding	60.2	4.5e-19	111	157	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v ++G+ W+ Ia+ ++ gR +kqc++rw+++l PKA51951.1 111 KGPWTQEEDDIIVKLVDKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 157 79****************************.***********97 PP
3	Myb_DNA-binding	55.1	1.8e-17	163	206	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT++E+ l +a+ ++G++ W+ Ia+ ++ gRt++++k++w++ PKA51951.1 163 KDAWTPDEEMELMKAHMKYGNK-WAEIAKVLP-GRTDNSIKNHWNS 206 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 584 aa Download sequence
MTALKTEESC VENKQSVTAS GSSISEGSNG LSRSSPAASS PVTSSPSHRR TSGPIRRAKG 60 GWTPEEDETL RRAVELHKGR SWKKIAESIP DRTEVQCLHR WQKVLNPNLV KGPWTQEEDD 120 IIVKLVDKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPE IRKDAWTPDE EMELMKAHMK 180 YGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KSEFYLKTGK LPPVNIPVNK PVVPIAAKDA 240 ANSSTRQFIY CSNKVLDANA KTISETFFTP TLPTDPCEVD EKKDWMVAIP VQVSDSHASV 300 EPVRGSDNSD APECQASTDM LHHRSDSRLK LEDRSFTTAV HQIEEPLGTI AGSPPDKYGS 360 LCYKPPQLED LGVFSSSSVL LEHSSTQPMF TPGIFSSPIS CLTPSFVNVA SSMERSVESI 420 LKSAARSYPN TPSIIKRKRE LHTPLPPDTM QTSETRIEDS CTSNEGMVDR STKGSGFSAS 480 KLFSSSSFVS GLPLDNAKVY NVSPPYRLRT RRKATFRSVE KQLDFTSEKV HIDGNSNSTC 540 LVVNRNSCSP RNVNVLSMQG MKLNDSPTEC DENNFSLTAE LGVT

Sequence ? help Back to Top

Protein Sequence Length: 584 aa Download sequence

MTALKTEESC VENKQSVTAS GSSISEGSNG LSRSSPAASS PVTSSPSHRR TSGPIRRAKG  60
GWTPEEDETL RRAVELHKGR SWKKIAESIP DRTEVQCLHR WQKVLNPNLV KGPWTQEEDD  120
IIVKLVDKYG PTKWSVIAKS LPGRIGKQCR ERWHNHLNPE IRKDAWTPDE EMELMKAHMK  180
YGNKWAEIAK VLPGRTDNSI KNHWNSSLKK KSEFYLKTGK LPPVNIPVNK PVVPIAAKDA  240
ANSSTRQFIY CSNKVLDANA KTISETFFTP TLPTDPCEVD EKKDWMVAIP VQVSDSHASV  300
EPVRGSDNSD APECQASTDM LHHRSDSRLK LEDRSFTTAV HQIEEPLGTI AGSPPDKYGS  360
LCYKPPQLED LGVFSSSSVL LEHSSTQPMF TPGIFSSPIS CLTPSFVNVA SSMERSVESI  420
LKSAARSYPN TPSIIKRKRE LHTPLPPDTM QTSETRIEDS CTSNEGMVDR STKGSGFSAS  480
KLFSSSSFVS GLPLDNAKVY NVSPPYRLRT RRKATFRSVE KQLDFTSEKV HIDGNSNSTC  540
LVVNRNSCSP RNVNVLSMQG MKLNDSPTEC DENNFSLTAE LGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09370.1	1e-109	MYB family protein