PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51525.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SBP

Protein Properties

Length: 692aa MW: 77585.3 Da PI: 6.8853

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.2e-40	33	110	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls+ k+yhrrhkvCe+h+k++++lv+++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ PKA51525.1 33 ACQVEGCGADLSTSKDYHRRHKVCEIHAKSTSALVNNVFQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHP 110 5**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MEWDLNDWNW DGDQFTARQT NASTSDVSSS RGACQVEGCG ADLSTSKDYH RRHKVCEIHA 60 KSTSALVNNV FQRFCQQCSR FHLLQEFDEG KRSCRRRLAG HNRRRRKTHP EAIANGTSTI 120 DEQASSYLLI SLIRILSNLQ CKISFNLKDQ DLLSNVIRSL DGLAGSVDTR NLSEPLQNRI 180 GSREFDLNDA CDDTPNCRGS ERLAPAECLD DGLVCHSAML ANSHLSNYPH NLDTLSTQSR 240 SSSNGTPQCK TGRIVFKLFG KEPNDFPVVL REQILDWLSH SPTDIESYIR PGCVILTIYV 300 RQAESTWNEV CRLFCAFEGK YLVQEPVQSF IRATAACKGS QCLSFICSVP NATGRGFIEV 360 EDHGLNCGFF PFIVAEEELC FEIQMLENAI DVTSYDVKNQ AIEFLNEMGW LLRRSTLKDR 420 SRELVAIPNG LFSLSRFRWL VAFAMDYQWC AVIKKLLDIL FDRIIDLGGL PPFEAVLSEE 480 LLHKAVRKNS RTMVQFLLAY RPCKATQLTR ESNLFRPDMH GLSKITPLHV AATMVEAESV 540 LDALTNDPAM IGIKAWSSSH DDTGFTPEDY ARARGHQSYI NLVNNKANKQ LHKAPLVLHI 600 NGSLLAATEA TSSHPGEENS GKAISLPYCQ LCSWQLARRS NISRSLAYRP SMLLMVGIAA 660 VCVCVGLLLK GPPEVSFIFP PFTWESLDYG FI

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MEWDLNDWNW DGDQFTARQT NASTSDVSSS RGACQVEGCG ADLSTSKDYH RRHKVCEIHA  60
KSTSALVNNV FQRFCQQCSR FHLLQEFDEG KRSCRRRLAG HNRRRRKTHP EAIANGTSTI  120
DEQASSYLLI SLIRILSNLQ CKISFNLKDQ DLLSNVIRSL DGLAGSVDTR NLSEPLQNRI  180
GSREFDLNDA CDDTPNCRGS ERLAPAECLD DGLVCHSAML ANSHLSNYPH NLDTLSTQSR  240
SSSNGTPQCK TGRIVFKLFG KEPNDFPVVL REQILDWLSH SPTDIESYIR PGCVILTIYV  300
RQAESTWNEV CRLFCAFEGK YLVQEPVQSF IRATAACKGS QCLSFICSVP NATGRGFIEV  360
EDHGLNCGFF PFIVAEEELC FEIQMLENAI DVTSYDVKNQ AIEFLNEMGW LLRRSTLKDR  420
SRELVAIPNG LFSLSRFRWL VAFAMDYQWC AVIKKLLDIL FDRIIDLGGL PPFEAVLSEE  480
LLHKAVRKNS RTMVQFLLAY RPCKATQLTR ESNLFRPDMH GLSKITPLHV AATMVEAESV  540
LDALTNDPAM IGIKAWSSSH DDTGFTPEDY ARARGHQSYI NLVNNKANKQ LHKAPLVLHI  600
NGSLLAATEA TSSHPGEENS GKAISLPYCQ LCSWQLARRS NISRSLAYRP SMLLMVGIAA  660
VCVCVGLLLK GPPEVSFIFP PFTWESLDYG FI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	7e-99	SBP family protein