PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51443.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 452aa MW: 51493.3 Da PI: 5.1614

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51443.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	166	189	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +LkrH r H PKA51443.1 166 YVCGVCGRKCRTNLDLKRHFRQlH 189 9******************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MRATASSYPF ADAGGGVVKP VRPPSFSLPS HFHRSCLPLH PTPCFLPPLS LCRSFPRPIA 60 AISSRSLDSS ADIEMIRDRD GSWSAREQKV IVLWDLDNKP PRGQPYSAAV SIRRVAESFG 120 RVVEISAYAN RHAFLHLPQW VVENRRERHR LDVVERKGFL VPDEPYVCGV CGRKCRTNLD 180 LKRHFRQLHE RERQKKLSRM RSLKGKKREK YKQRYISGNH KYTEAARQLL TPKTGYGLAS 240 ELRRAGVFVK TVEDKPQAAD AALKRQMRHS LSRGIDCLFL VSDDSDFSEM IRSAREADLR 300 TVVIGDGRRA LGRLADIWLP WMQVEQGEVG EEVLLNGDFT EGEEDEEDNG EFTEGEEDEE 360 DNEAFYSSDL QYVEEDDDDD DRDCDDHYDH VVHEVVVESS GFDGVNISVF SEEEVWDVKK 420 FRSRKDNSGV SEASITGTSL SWTVEDEEGE HD

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MRATASSYPF ADAGGGVVKP VRPPSFSLPS HFHRSCLPLH PTPCFLPPLS LCRSFPRPIA  60
AISSRSLDSS ADIEMIRDRD GSWSAREQKV IVLWDLDNKP PRGQPYSAAV SIRRVAESFG  120
RVVEISAYAN RHAFLHLPQW VVENRRERHR LDVVERKGFL VPDEPYVCGV CGRKCRTNLD  180
LKRHFRQLHE RERQKKLSRM RSLKGKKREK YKQRYISGNH KYTEAARQLL TPKTGYGLAS  240
ELRRAGVFVK TVEDKPQAAD AALKRQMRHS LSRGIDCLFL VSDDSDFSEM IRSAREADLR  300
TVVIGDGRRA LGRLADIWLP WMQVEQGEVG EEVLLNGDFT EGEEDEEDNG EFTEGEEDEE  360
DNEAFYSSDL QYVEEDDDDD DRDCDDHYDH VVHEVVVESS GFDGVNISVF SEEEVWDVKK  420
FRSRKDNSGV SEASITGTSL SWTVEDEEGE HD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-137	C2H2 family protein