PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51202.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 409aa MW: 44650.7 Da PI: 5.1716

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.7e-06	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +C+ ++e++ +C+++ lC +C + H+ H+ PKA51202.1 4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHS 43 8*****************************5556666665 PP
2	zf-B_box	17.3	9.7e-06	46	86	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+++ +++++ C + + lC++C ++H H+ PKA51202.1 46 ILCDRCCSQPATVRCLEESISLCQNCDWNGHDAsssasgHK 86 57****************************84355666655 PP
3	CCT	68.7	1.5e-23	352	395	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeKrktRkF+KkirYesRKa+A++R RvKGrFvk+ PKA51202.1 352 RDNAVMRYKEKRKTRKFDKKIRYESRKARADTRRRVKGRFVKAG 395 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGSVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTILCDR CCSQPATVRC 60 LEESISLCQN CDWNGHDASS SASGHKRHVI NCYSGCPSAA ELARIWSFAP DCPPMVDSSC 120 EKGMGLMSIN ENSASTYWGL QENSGNPVMS NISRMADLEN MNTKIDHIAS SSTSAATAMI 180 CCTDQLAGSV DSTTPKAKDN EVTKDDLFGS FAVDDVDLNF ENYEELFGGS NTHSEQIFDD 240 VGIDSFFDMK ENFAANSNCQ GEYVVEDISM QAAGSNAVSA DSRMSCPGAK ADSSMSIPAR 300 QARSCLSLSF SGLTGESSAG DYQDCGMSSM LLVGEPPWCM PCPESLSHAA NRDNAVMRYK 360 EKRKTRKFDK KIRYESRKAR ADTRRRVKGR FVKAGEAYDY DPLCQTRSC

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGSVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHSRTILCDR CCSQPATVRC  60
LEESISLCQN CDWNGHDASS SASGHKRHVI NCYSGCPSAA ELARIWSFAP DCPPMVDSSC  120
EKGMGLMSIN ENSASTYWGL QENSGNPVMS NISRMADLEN MNTKIDHIAS SSTSAATAMI  180
CCTDQLAGSV DSTTPKAKDN EVTKDDLFGS FAVDDVDLNF ENYEELFGGS NTHSEQIFDD  240
VGIDSFFDMK ENFAANSNCQ GEYVVEDISM QAAGSNAVSA DSRMSCPGAK ADSSMSIPAR  300
QARSCLSLSF SGLTGESSAG DYQDCGMSSM LLVGEPPWCM PCPESLSHAA NRDNAVMRYK  360
EKRKTRKFDK KIRYESRKAR ADTRRRVKGR FVKAGEAYDY DPLCQTRSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-120	CO-like family protein