PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA50766.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 350aa    MW: 37917.1 Da    PI: 7.9963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA50766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.6e-07159180223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  PKA50766.1 159 FCEICGKGFRRDANLRMHMRAH 180
                 6*******************99 PP
2zf-C2H210.70.0016248271123
                 EEETTTT.EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                 y C  C+ ksFs   +L++H +++
  PKA50766.1 248 YNCDLCNsKSFSVVADLNSHRKSC 271
                 89*******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    
MISPGSRLTG GAAAISESPD SFTSIGVSVT DYTDGAPLPS EPLIPLVKLS FLDQKMESIR  60
RFLSDSIDRR ASIGGEQLQL ISAEIASTVH QVIVNGSALI ACSPAAVGFK ISRLPTGSAC  120
MRSDDSDLVQ HLPDPVADEA EADILEIDAV ELMTERVHFC EICGKGFRRD ANLRMHMRAH  180
GDRFKTLESL SKPSGRVTSG GSRSGRPVLF SCPFPGCRRN QNHSSFRPLK TAVCVRNHFR  240
RSHCPKKYNC DLCNSKSFSV VADLNSHRKS CGMRRWRCSC GTSFSRKDKL FGHVTQLEGH  300
EPAVLAKEEK GKGIMVAEVD ESRGGQAGPS LDDGFFDGLM EEIGGMGGGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-69C2H2 family protein