PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50418.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 642aa MW: 70711.3 Da PI: 6.3995

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.2	7.5e-12	325	381	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g PKA50418.1 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEDKAARAYDLAALKYWG 381 78*****************87776664446655.7799************98 PP
2	AP2	36	1.7e-11	413	458	7	55
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PKA50418.1 413 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 458 8999******988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MKPMSGGNGN WLGFSLSSQM SVEAACSAEQ PEHHHRQSHH PVRANASSTV SNGVPAGSFY 60 FSSSHLSNSG ICYGVEGANG VMFSELSVMP LKSDGSLCIM EALNRSQHHQ GMVPCQSPKL 120 EDFLGGGPNM GTHHQYGCNE REAMSLSLDS MYYQHQSHEP EGSSYREQQH SLDLLHQPFR 180 QQNPYFQPLQ EGMCSGLSGH HEMYEAAAAE EEPMADHHGF PSFKSWVNRH YNGTTDSKLM 240 DGDEADQMES GSVGSIGYGD LYSLSLSMSP GSQSSCITAP QQVSTAAGVS DCMTLDTSKK 300 RGAAKGVQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG 360 GYDMEDKAAR AYDLAALKYW GPSTHINFPL ENYQKELEEM NNMTRQEYVA HLRRHHQHGR 420 WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGAN AVTNFDITRY DVDKIMASNT 480 LLSGELAKKN KVPICGSSNA APSSVQNCSA ELNSTEDGSS GSDWKMVLCQ SPHQNLSMSE 540 APDEKPMLNG ICSMETESLE LDQGNDDSRK HDIRTLFQIS GLGSDADVCS KIYGHAPMAG 600 SSQQIRTLML YNCFCSLLKI TRACQDGGHD HGSLNGFEEQ LC

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MKPMSGGNGN WLGFSLSSQM SVEAACSAEQ PEHHHRQSHH PVRANASSTV SNGVPAGSFY  60
FSSSHLSNSG ICYGVEGANG VMFSELSVMP LKSDGSLCIM EALNRSQHHQ GMVPCQSPKL  120
EDFLGGGPNM GTHHQYGCNE REAMSLSLDS MYYQHQSHEP EGSSYREQQH SLDLLHQPFR  180
QQNPYFQPLQ EGMCSGLSGH HEMYEAAAAE EEPMADHHGF PSFKSWVNRH YNGTTDSKLM  240
DGDEADQMES GSVGSIGYGD LYSLSLSMSP GSQSSCITAP QQVSTAAGVS DCMTLDTSKK  300
RGAAKGVQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG  360
GYDMEDKAAR AYDLAALKYW GPSTHINFPL ENYQKELEEM NNMTRQEYVA HLRRHHQHGR  420
WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGAN AVTNFDITRY DVDKIMASNT  480
LLSGELAKKN KVPICGSSNA APSSVQNCSA ELNSTEDGSS GSDWKMVLCQ SPHQNLSMSE  540
APDEKPMLNG ICSMETESLE LDQGNDDSRK HDIRTLFQIS GLGSDADVCS KIYGHAPMAG  600
SSQQIRTLML YNCFCSLLKI TRACQDGGHD HGSLNGFEEQ LC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-111	AP2 family protein