PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49643.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family AP2
Protein Properties Length: 224aa    MW: 24395.6 Da    PI: 11.1172
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.62.6e-073856221
         AP2  2 gykGVrwdkkrgrWvAeIrd 21
                +y+GVr+++ +g+++AeIrd
  PKA49643.1 38 RYRGVRRRP-WGKYAAEIRD 56
                8********.********** PP
2AP261.51.9e-19120171256
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrd      ++ +r++lg+f+taeeAa+a+++a+ +++g+
  PKA49643.1 120 RYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFDTAEEAAAAYDRAAFRMRGA 171
                 8********.**********....33236**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MILFEILTEA SAMASSGGGA SKAEGAAKRA YRPPTIKRYR GVRRRPWGKY AAEIRDSARH  60
GARHDSTGPS HPLPLNENDS QEMILFEILT EASAMASSGG GASKAEGAAK RGYRPPTIKR  120
YRGVRRRPWG KYAAEIRDSA RHGARVWLGT FDTAEEAAAA YDRAAFRMRG AKALLNFPPG  180
AVIGDAAGGW MMEGGSWREG KKGVAPRAQR ERERVLEERR VNGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-20ERF family protein