PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49196.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

AP2

Protein Properties

Length: 345aa MW: 38649.4 Da PI: 9.7356

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	29.9	1.3e-09	64	116	8	55
AP2 8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 +++++g+++A+++d ++n k+ ++++lg +g + Aa+a++ a++k++g PKA49196.1 64 RHRWTGKYEAHLWDkNCWNEsqnKKgRQVYLGAYGDESAAARAYDLAALKYWG 116 7999********999955656446******88***********98 PP
2	AP2	50.2	6.5e-16	159	210	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +++ +lg+f t eeAa a++ a+ +++g PKA49196.1 159 SKYRGVARHHHNGRWEARIGRvF---G-NRYLYLGTFATQEEAATAYDMAAIEYRG 210 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MAKKKQSSPI SSSKKVAGCG SDGVVKVKRM RKSVPREAPS RRSSVYRGVT SLSRIWICSV 60 RRHRHRWTGK YEAHLWDKNC WNESQNKKGR QVYLGAYGDE SAAARAYDLA ALKYWGRETV 120 LNFPLSNYQE ELKEMEGQSK EEYIGSLRRK SSGFSRGASK YRGVARHHHN GRWEARIGRV 180 FGNRYLYLGT FATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPNK DDAGEEHPSP 240 PVAATETEDE NLFGTKISPC QHAGGAAAAP STALGLLLQS PKLKEMLERS PSAATSAGSP 300 QESDRKTPRR SFPEEVQTYF DCHDDAILAE LSAFQAPIFQ CELGL

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MAKKKQSSPI SSSKKVAGCG SDGVVKVKRM RKSVPREAPS RRSSVYRGVT SLSRIWICSV  60
RRHRHRWTGK YEAHLWDKNC WNESQNKKGR QVYLGAYGDE SAAARAYDLA ALKYWGRETV  120
LNFPLSNYQE ELKEMEGQSK EEYIGSLRRK SSGFSRGASK YRGVARHHHN GRWEARIGRV  180
FGNRYLYLGT FATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKWLRPNK DDAGEEHPSP  240
PVAATETEDE NLFGTKISPC QHAGGAAAAP STALGLLLQS PKLKEMLERS PSAATSAGSP  300
QESDRKTPRR SFPEEVQTYF DCHDDAILAE LSAFQAPIFQ CELGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-108	AP2 family protein