PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA49163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | NF-YC | ||||||||
Protein Properties | Length: 175aa MW: 19736.3 Da PI: 6.1477 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 171 | 1.3e-53 | 48 | 150 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 l++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+k+diaaa+trtd+fdflvdivp PKA49163.1 48 LQMFWADQyreIEQTTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKNDIAAAITRTDVFDFLVDIVP 146 89****99999**************************************************************************************** PP NF-YC 98 rdel 101 r+e PKA49163.1 147 REEG 150 *985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MDQHGHGTPP AIGVAAPVPY PAATAAPASY QAAYGHLYQQ QQQQQQHLQM FWADQYREIE 60 QTTDFKNHNL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILELTHR GWAHAEENKR 120 RTLQKNDIAA AITRTDVFDF LVDIVPREEG KEDAVPRALP GPGGPVDPLY YYVQQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 3e-64 | NF-YC family protein |