PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49073.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 345aa MW: 39043.4 Da PI: 6.6613

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.2e-18	131	184	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PKA49073.1 131 KKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 184 456899***********************************************9 PP
2	HD-ZIP_I/II	131.2	4.1e-42	130	222	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr++da+k++n++L++++++L++e+++ PKA49073.1 130 EKKRRLNMEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFDAIKADNDALHSNNTKLQAEIMA 222 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MRLVEENMTS SSNGSMAPSP FFSPTNFILQ MQSTTDTDSH DHHHHHHHHH HHEGDRRGTD 60 DNHHQPPIIP ILNPLLPCSI NIPHDFSRSA GMAAMVGIKR TSMSFSAGNV NETCEGEVDE 120 LSDDCSQAGE KKRRLNMEQV RTLEKNFELG NKLEPERKMQ LARALGLQPR QIAIWFQNRR 180 ARWKTKQLEK DYELLKRQFD AIKADNDALH SNNTKLQAEI MALRGREAPE RINLNKETEG 240 SSSNRSENSS EINLDISRTT STATAAPSDS PLNPNVHSIP FFQSGRPPPV ISQLLQSSSS 300 SRQDSLHCIK MEQPGAVTEE NLSNLLCGME DQNAFWPWPD HHHFH

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MRLVEENMTS SSNGSMAPSP FFSPTNFILQ MQSTTDTDSH DHHHHHHHHH HHEGDRRGTD  60
DNHHQPPIIP ILNPLLPCSI NIPHDFSRSA GMAAMVGIKR TSMSFSAGNV NETCEGEVDE  120
LSDDCSQAGE KKRRLNMEQV RTLEKNFELG NKLEPERKMQ LARALGLQPR QIAIWFQNRR  180
ARWKTKQLEK DYELLKRQFD AIKADNDALH SNNTKLQAEI MALRGREAPE RINLNKETEG  240
SSSNRSENSS EINLDISRTT STATAAPSDS PLNPNVHSIP FFQSGRPPPV ISQLLQSSSS  300
SRQDSLHCIK MEQPGAVTEE NLSNLLCGME DQNAFWPWPD HHHFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	187	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	9e-69	HD-ZIP family protein