PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48280.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARR-B

Protein Properties

Length: 678aa MW: 74899.5 Da PI: 6.044

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48280.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.2	1.6e-27	209	262	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ L++e+v+SHLQkYRl PKA48280.1 209 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILDLMNVDKLSRENVASHLQKYRL 262 79*****************.******************************8 PP
2	Myb_DNA-binding	36	1.6e-11	211	261	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e++ ++v av+qlG + +k+I m+ +++++++ s++qky+ PKA48280.1 211 RVVWSVELHRKFVAAVNQLGIDkaVPKRILDLMNvDKLSRENVASHLQKYR 261 678******************************99***********7 PP
3	Response_reg	75.9	1.5e-25	20	128	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ +++l+++l + +y +v+++ ++ +al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge + + + + Ga PKA48280.1 20 VLAVDDDPICLKVLETLLLRCKY-HVTTTNQAIKALNMLRENRdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETKAVMKGITHGAC 114 799******************.***********999889***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ PKA48280.1 115 DYLLKPVRIEELRN 128 **********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MTVEGKNVGS VDQFPIGMRV LAVDDDPICL KVLETLLLRC KYHVTTTNQA IKALNMLREN 60 RDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG ETKAVMKGIT HGACDYLLKP 120 VRIEELRNIW QHVVRRKKVD QKDRHSLDIV EDNEKTLRSN SEGTQALGAN GQSDRNGKVY 180 RKRKDQYDED EDDCEENTQE NEDSSTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKRIL 240 DLMNVDKLSR ENVASHLQKY RLYLKRLSAV ATQQANMAAA LGGRDPSYLH MGTFDSHTSF 300 HGLSSSGQFH SLAPFQTSGV SSRENPSLLG LPGLAPGMVQ IICPQNNTRN SMNDLSTFQD 360 VAALASEHVN LFQGIPTSLE LDQLQQKQKH VNEANKRLTG ILLGSPSKPF IGMMNSSSLG 420 NHSSVGVPSL ATDHLEMDSG VSSCLSDLNR CNETWQSAAS LSGCNTNTFP IGASFSTDNL 480 ASCNKAKVTN STISQINGNL LNVSSNNLMG REMQFQTSSI YGNSLLMPSA IDVDPKYLNC 540 KTLRNIKQDL EDTKQQNALE QVVGFSSSLN SSLPKQAFLN AAADSHRLQN EVYNKVDTST 600 INQNAAFLKH FKTDNSVIDN HVTYDENILA TSNMPYGFGP NTCNFDELMN AVIKPERDDI 660 GFIDGELGCD LFPLSSCM

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MTVEGKNVGS VDQFPIGMRV LAVDDDPICL KVLETLLLRC KYHVTTTNQA IKALNMLREN  60
RDKFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG ETKAVMKGIT HGACDYLLKP  120
VRIEELRNIW QHVVRRKKVD QKDRHSLDIV EDNEKTLRSN SEGTQALGAN GQSDRNGKVY  180
RKRKDQYDED EDDCEENTQE NEDSSTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKRIL  240
DLMNVDKLSR ENVASHLQKY RLYLKRLSAV ATQQANMAAA LGGRDPSYLH MGTFDSHTSF  300
HGLSSSGQFH SLAPFQTSGV SSRENPSLLG LPGLAPGMVQ IICPQNNTRN SMNDLSTFQD  360
VAALASEHVN LFQGIPTSLE LDQLQQKQKH VNEANKRLTG ILLGSPSKPF IGMMNSSSLG  420
NHSSVGVPSL ATDHLEMDSG VSSCLSDLNR CNETWQSAAS LSGCNTNTFP IGASFSTDNL  480
ASCNKAKVTN STISQINGNL LNVSSNNLMG REMQFQTSSI YGNSLLMPSA IDVDPKYLNC  540
KTLRNIKQDL EDTKQQNALE QVVGFSSSLN SSLPKQAFLN AAADSHRLQN EVYNKVDTST  600
INQNAAFLKH FKTDNSVIDN HVTYDENILA TSNMPYGFGP NTCNFDELMN AVIKPERDDI  660
GFIDGELGCD LFPLSSCM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-118	ARR-B family protein