PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48118.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 533aa MW: 56412 Da PI: 8.8584

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.7e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PKA48118.1 70 FICEVCNKGFQREQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	12.7	0.0004	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ PKA48118.1 146 WKCDKCSKRYAVQSDWKAHSKTC 168 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MATASRDKDH LISQLKPQQQ LPSSSSSAMA AANSQGSAPA KKKRNLCGNP YPDAEVIALS 60 PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKEVRRRV YLCPELTCVH 120 HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL 180 FSRRDSFITH RAFCDALAQE NARLPTIGSH LYSGSGIGLA SLQNHAARPV DLLRLGAAGG 240 GGGGGGGGGG SSTVGLQFNH LISHSNTASF RAPHPSHSSS FFLGGADESS KPFQGLMQLP 300 DLQPFNLSFF SDGSTASSMI NNSSNAGGGI QNSHLMLHDQ FIDVNGCGAS GTPAGLFAGN 360 LIGDDMPSTA IFNTSVQNVD AVNLPQMSAT ALLQKAAQMG SSSSNTGGGS GAGSGAAILS 420 GFGGSSSSSM KPANVNHLQE IMNTFSYGNS GMFPGGGREE EAKFIGEFDG GFCEIDESRY 480 HQHHHHHTDQ IGSIGGLGGS DGLTRDFLGV GSILRGMGGG GFSKRAESPH HGY

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MATASRDKDH LISQLKPQQQ LPSSSSSAMA AANSQGSAPA KKKRNLCGNP YPDAEVIALS  60
PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSTKEVRRRV YLCPELTCVH  120
HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE NARLPTIGSH LYSGSGIGLA SLQNHAARPV DLLRLGAAGG  240
GGGGGGGGGG SSTVGLQFNH LISHSNTASF RAPHPSHSSS FFLGGADESS KPFQGLMQLP  300
DLQPFNLSFF SDGSTASSMI NNSSNAGGGI QNSHLMLHDQ FIDVNGCGAS GTPAGLFAGN  360
LIGDDMPSTA IFNTSVQNVD AVNLPQMSAT ALLQKAAQMG SSSSNTGGGS GAGSGAAILS  420
GFGGSSSSSM KPANVNHLQE IMNTFSYGNS GMFPGGGREE EAKFIGEFDG GFCEIDESRY  480
HQHHHHHTDQ IGSIGGLGGS DGLTRDFLGV GSILRGMGGG GFSKRAESPH HGY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-112	C2H2 family protein