PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47574.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 404aa MW: 44757.4 Da PI: 8.9732

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H PKA47574.1 56 YICEVCHKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	12.2	0.00054	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + PKA47574.1 132 WKCDKCSKRYAVQSDWKAHSKIC 154 58*****************9876 PP
3	zf-C2H2	11.1	0.0012	162	180	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + PKA47574.1 162 DCGTIFSRKDSFVTHRAFC 180 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MVPQKVITVV CKNDEPAGVP LPPVSTKRRR NPPGHPDPEA EVVALSPRAL LATNRYICEV 60 CHKGFQRDQN LQLHRRGHNL PWKLKQRSNN EVKKRVYVCP EVTCAHHDPT RALGDLTGIK 120 KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTIFSRK DSFVTHRAFC 180 DALTEENFRA SHGLAAIVNN LHAQSHHELI SHSIPSLNSS IMEDSAAKSL PLNPLIHSSS 240 DFLYNNHGGL RASGLHLSGG SSIMSATALL QKAAEMGPKV SDDSMSSALL RGFSSEVSSE 300 AGKAARAYAG TQAALHMSSR RGAESLGLRA ESFVNLQMGG GERKIDTIGH HRRADWFGEE 360 VGEGTNRRMT QDFLGLGSAG NVEYHEDDIY SYQSMAQGRE MWDY

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MVPQKVITVV CKNDEPAGVP LPPVSTKRRR NPPGHPDPEA EVVALSPRAL LATNRYICEV  60
CHKGFQRDQN LQLHRRGHNL PWKLKQRSNN EVKKRVYVCP EVTCAHHDPT RALGDLTGIK  120
KHYSRKHGEK KWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTIFSRK DSFVTHRAFC  180
DALTEENFRA SHGLAAIVNN LHAQSHHELI SHSIPSLNSS IMEDSAAKSL PLNPLIHSSS  240
DFLYNNHGGL RASGLHLSGG SSIMSATALL QKAAEMGPKV SDDSMSSALL RGFSSEVSSE  300
AGKAARAYAG TQAALHMSSR RGAESLGLRA ESFVNLQMGG GERKIDTIGH HRRADWFGEE  360
VGEGTNRRMT QDFLGLGSAG NVEYHEDDIY SYQSMAQGRE MWDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-112	C2H2 family protein