PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47329.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 303aa MW: 31724.4 Da PI: 10.0891

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47329.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28	3.8e-09	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ f+ + Ck+Gd+C+FaHg+ PKA47329.1 105 KTRMCNKFSTSEGCKFGDKCRFAHGE 130 89**********************96 PP
2	zf-CCCH	35.1	2.2e-11	270	294	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++f + G C +G+rC+FaHg PKA47329.1 270 YKTKLCDNFTK-GSCTFGERCHFAHG 294 9********.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MDSLGAAGKR GRTDAGNTNG GVPAAKRSKD MESGQHGIGS KSKPCTKFFS VTGCPFGENC 60 HFLHYVPGGY NAVALMNNAV VPSRKPFLSP SPHFPDSQRS PFIVKTRMCN KFSTSEGCKF 120 GDKCRFAHGE RELGKPILSS LEPHMAPPPM PGRFPGLVDP LPPVVGPAAT FGASATAKIS 180 VGASLASAII GKGGVNRKQI CRLTGAKLMI RDHDTDPNLR NIELEGSFDQ IKHATAMVRE 240 LIVNISSSAS MPLKAAGAPA GGGGGPGSNY KTKLCDNFTK GSCTFGERCH FAHGAGELKK 300 SAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	9e-51	C3H family protein