PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47242.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

RAV

Protein Properties

Length: 401aa MW: 43006.7 Da PI: 10.3847

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	37.2	7.1e-12	102	150	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f + +Aa+a++ a+++++g PKA47242.1 102 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNLERDAARAYDVAAQRFRG 150 78**9888.8*****3.....5******99***********98 PP
2	B3	93.9	1.1e-29	224	333	1	98
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+ tpsdv+k++rlv+pk++ae+h +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F++++ PKA47242.1 224 FEKAVTPSDVGKLNRLVIPKQHAEKHfplppaaaaeggAAAAAKGLLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEMGLNAGDTVGFYRSKG 322 89***********************99999998876444558899**********************************************9877 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++l++ ++ PKA47242.1 323 ADRQLYIDYRS 333 77778877666 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MWRLMIGTRW YSPKILHPSH SPESSSSPIK GPLTLHGALI PAHILMDGSS GFDDSSTTTA 60 SPPRATPLQR MGSGASSVTD PPAGPGTDLG GEAESGRKLP SSQYKGVVPQ PNGRWGAQIY 120 EKHQRVWLGT FNLERDAARA YDVAAQRFRG RDAATNFPPL AAADGPDAAR ELAFLLSRSK 180 AEIVDMLRKH TYLDELRHSA PATTPSGDPL RRSFPARPAR EQLFEKAVTP SDVGKLNRLV 240 IPKQHAEKHF PLPPAAAAEG GAAAAAKGLL LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW 300 SRFVKEMGLN AGDTVGFYRS KGADRQLYID YRSRDAAGAG AMVRLFGVNI AKTSISAVAA 360 GGMGENRKRS LGEVEAASAA SVAASVAAPP PWIKKQCVVG F

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MWRLMIGTRW YSPKILHPSH SPESSSSPIK GPLTLHGALI PAHILMDGSS GFDDSSTTTA  60
SPPRATPLQR MGSGASSVTD PPAGPGTDLG GEAESGRKLP SSQYKGVVPQ PNGRWGAQIY  120
EKHQRVWLGT FNLERDAARA YDVAAQRFRG RDAATNFPPL AAADGPDAAR ELAFLLSRSK  180
AEIVDMLRKH TYLDELRHSA PATTPSGDPL RRSFPARPAR EQLFEKAVTP SDVGKLNRLV  240
IPKQHAEKHF PLPPAAAAEG GAAAAAKGLL LNFEDGGGKV WRFRYSYWNS SQSYVLTKGW  300
SRFVKEMGLN AGDTVGFYRS KGADRQLYID YRSRDAAGAG AMVRLFGVNI AKTSISAVAA  360
GGMGENRKRS LGEVEAASAA SVAASVAAPP PWIKKQCVVG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-104	RAV family protein