PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA47095.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 338aa    MW: 37962.5 Da    PI: 7.5538
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA47095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-1693138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+ +G+ +W++Ia ++  gR++k+c++rw++ 
       PKA47095.1  93 RGHWRPAEDSKLKELVAIYGPQNWNLIAGKLE-GRSGKSCRLRWFNQ 138
                      899*****************************.***********996 PP
2Myb_DNA-binding51.32.8e-16145188146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l  a++++G++ W+  ar ++ gRt++ +k++w+ 
       PKA47095.1 145 RSAFSEEEEEKLMAAHRLYGNK-WAMLARLFP-GRTDNAVKNHWHV 188
                      789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGRGRWSCIQ PRDEVQCPSS SSAKSFFMEM NSLSISQQCS SPSIHHFLLL AGSSENSETT  60
GEKLFNASIE DETSKDAGGS TNGSTGQSKL FARGHWRPAE DSKLKELVAI YGPQNWNLIA  120
GKLEGRSGKS CRLRWFNQLD PRINRSAFSE EEEEKLMAAH RLYGNKWAML ARLFPGRTDN  180
AVKNHWHVIM ARKYREQSSA YKKRKLSQAI HRRLEETAAS PHNFSFSSFP LASISAKEIP  240
FACHSGPREQ EMPKIFCSST EDQEGEKEVL YYRQATTSFY IEMQQPGCHL WQASAPSPLS  300
EAAAATAEEE VNRDDENRGQ MKPFMAPTFI DFLGVGTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-75MYB family protein