PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47039.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GRF

Protein Properties

Length: 263aa MW: 30401.2 Da PI: 8.5458

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.3	3.5e-25	84	127	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e PKA47039.1 84 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 127 79***************************************997 PP
2	QLQ	61.5	2.4e-21	13	48	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Q+q+L++Q+l+yKy++++ P+Pp+L+ +i++ PKA47039.1 13 PFTASQWQELEHQALIYKYMVSGSPIPPDLIIPIRR 48 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MMMMNEKSSS RYPFTASQWQ ELEHQALIYK YMVSGSPIPP DLIIPIRRSF LLESAKASPS 60 LSFSPQAQLG WSCFQAGYGR KAEDPEPGRC RRTDGKKWRC SKEAYPDSKY CERHMHRGKN 120 RSRKPVEISL SSNTQNSSSS SFPANLSYPY PNASSLLHMD PLSYSMDRDY RMKDLEGCSF 180 FSESSLQLKP LGTSSMVEGK QSGYCLSKEE EEERQRPLRH FFDEWPQKNK ESWMELEDEN 240 GSYSKTQLSI SFPKWFLRLS SHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-45	GRF family protein