PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA47023.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 32381.7 Da PI: 8.4952

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA47023.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.1	1.1e-16	140	194	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ + + LAk+l+L rqV vWFqNrRa+ k PKA47023.1 140 RKKLRLSKEQSAFLEESFKEHTTLNPRLKLALAKQLNLRPRQVEVWFQNRRARTK 194 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	3e-40	140	230	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p+ K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++dal+een+rL+ke +eLr +lk PKA47023.1 140 RKKLRLSKEQSAFLEESFKEHTTLNPRLKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDALTEENRRLRKELSELR-ALK 230 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MELELRLGDR PPGRQLKNTT AATAAGGGAG GGSGRQNRGL NLGFCVGLVG NESSCPAELP 60 VRLDLLPLSL GPRLAAPSLG FPWASENTNL EALGRGLDVN LVPEEGEAAE VDPAISSSPP 120 AETEKVLSRA SDEEENSGAR KKLRLSKEQS AFLEESFKEH TTLNPRLKLA LAKQLNLRPR 180 QVEVWFQNRR ARTKLKQTEV DCEYLKRCCD ALTEENRRLR KELSELRALK TSHSFFMQPP 240 ATTLSICAAC ERLPKSSALV SGAEAARPPA SAFAPTSAKP RFFDFADPRP APANQPSAAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	5e-68	HD-ZIP family protein