PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46980.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 493aa MW: 55274.3 Da PI: 5.8825

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.5e-07	250	271	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PKA46980.1 250 FCSICGKGFKRDANLRMHMRGH 271 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MDHKRTMSND VLASSCSFAG DQPRHLSRSQ PSQQMCSKSF NVDDQTEQSW LESLPPEYPQ 60 SLSLNCSINQ IVKNATSDWD AKIMLNNLSF LEQKIHQVQD IVRSIICQKS VTSPQPNDLA 120 VRQQLLTTDL TSIIVDLIST AGNLLPSIKN NILSTNPPPE ELYSHFVSST ISKPDAILPK 180 SEELPLEKEK DVSDDEELMK SVVDCSGKLY DSLHNEDHDI KDIEDCTEAD GSYEVLQLEK 240 EEILAPHTHF CSICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPSKDLEP AIIKRYSCPF 300 VGCKRNKEHR SFQPLKTLLC VKNHYKRSHC EKSYICSRCH TKKFSVLADL KTHEKHCGRD 360 KWLCSCGTTF SRKDKLFGHV ALFQGHTPAL TADEDCVLAT LEHGNGKELG IEAEANRCDL 420 TSDSLNDVLD TKIFDDDRTY LSALSFEPND YGVTDEFMKV AFGLLENSSS LYPPGHFDFV 480 QKYGGNPGSG SFL

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MDHKRTMSND VLASSCSFAG DQPRHLSRSQ PSQQMCSKSF NVDDQTEQSW LESLPPEYPQ  60
SLSLNCSINQ IVKNATSDWD AKIMLNNLSF LEQKIHQVQD IVRSIICQKS VTSPQPNDLA  120
VRQQLLTTDL TSIIVDLIST AGNLLPSIKN NILSTNPPPE ELYSHFVSST ISKPDAILPK  180
SEELPLEKEK DVSDDEELMK SVVDCSGKLY DSLHNEDHDI KDIEDCTEAD GSYEVLQLEK  240
EEILAPHTHF CSICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPSKDLEP AIIKRYSCPF  300
VGCKRNKEHR SFQPLKTLLC VKNHYKRSHC EKSYICSRCH TKKFSVLADL KTHEKHCGRD  360
KWLCSCGTTF SRKDKLFGHV ALFQGHTPAL TADEDCVLAT LEHGNGKELG IEAEANRCDL  420
TSDSLNDVLD TKIFDDDRTY LSALSFEPND YGVTDEFMKV AFGLLENSSS LYPPGHFDFV  480
QKYGGNPGSG SFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-136	C2H2 family protein