PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46110.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 653aa MW: 73466.2 Da PI: 5.3681

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46110.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00011	495	532	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+a K s ++ Le+++++ Lq PKA46110.1 495 RKLIQDRIKELRELIPNA-----SKCSISALLERTINHFIFLQ 532 67799**********9.....79*********9987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MGTATTLKHL FRNLFHHTMW KYAVLWKLHH ESHMLLAYEE AYAIDSSYIQ MVVSNITSYS 60 YLLGEGVVGE VAVLGKHKWF SFGESNSKSL LECHEELQLQ VLAGIKTILL LPLLPIGVLQ 120 LGSLDELSED LRMVSQLMDL ILHHQYTLDS PNTVDLRMDQ IDSTVAPSYL AVATDLSASN 180 HSQPQQPDVP TLTVDSEMKS DFLLTAFDLL PPVMVQTCHN KIRGDAVCTE QFPYHSKGQS 240 VLNSYSITGT TMGTSSDFLH NEEEVRMIPQ NGQASVSENS IMFDYFINEV QQHGYDVYHI 300 NNSYAELPKL GNECNTGIDS TSEYLNFSID LEPYEAIRYS SHSLLEVPES VGSLVPEHGA 360 FMEESRKEGQ LDGTKAVLCS ELGAKELESS KYIRYCSCST DSSVCCLGRC RAEDVSGSEE 420 SALDSHQNSS LFPSSEDFAG YFSNNASTSS ICNPIANREQ ENILFGFQES CPKASYSCRK 480 QPRYRKLDKT RPRDRKLIQD RIKELRELIP NASKCSISAL LERTINHFIF LQSVPTHADR 540 LSRSRNSKDE GGDYSIHGGS TWAGNTGIKS KAFPLIIENL DQPDQMLLEM RCKNYILFIE 600 IVQAVKRLGL TILKGVLESR SDELWAHFIL EVPKGFHRLE IIWPLLQLLQ IKL

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MGTATTLKHL FRNLFHHTMW KYAVLWKLHH ESHMLLAYEE AYAIDSSYIQ MVVSNITSYS  60
YLLGEGVVGE VAVLGKHKWF SFGESNSKSL LECHEELQLQ VLAGIKTILL LPLLPIGVLQ  120
LGSLDELSED LRMVSQLMDL ILHHQYTLDS PNTVDLRMDQ IDSTVAPSYL AVATDLSASN  180
HSQPQQPDVP TLTVDSEMKS DFLLTAFDLL PPVMVQTCHN KIRGDAVCTE QFPYHSKGQS  240
VLNSYSITGT TMGTSSDFLH NEEEVRMIPQ NGQASVSENS IMFDYFINEV QQHGYDVYHI  300
NNSYAELPKL GNECNTGIDS TSEYLNFSID LEPYEAIRYS SHSLLEVPES VGSLVPEHGA  360
FMEESRKEGQ LDGTKAVLCS ELGAKELESS KYIRYCSCST DSSVCCLGRC RAEDVSGSEE  420
SALDSHQNSS LFPSSEDFAG YFSNNASTSS ICNPIANREQ ENILFGFQES CPKASYSCRK  480
QPRYRKLDKT RPRDRKLIQD RIKELRELIP NASKCSISAL LERTINHFIF LQSVPTHADR  540
LSRSRNSKDE GGDYSIHGGS TWAGNTGIKS KAFPLIIENL DQPDQMLLEM RCKNYILFIE  600
IVQAVKRLGL TILKGVLESR SDELWAHFIL EVPKGFHRLE IIWPLLQLLQ IKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	4e-39	bHLH family protein