PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027368344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22841.4 Da PI: 5.1778 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.1 | 7.9e-40 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rr+C ++Cvlapyfp++++++f n+h+lFG+ +++++lk+l++++r++a+s+++y++++ra dPv G++++i++lq+q+e+++ael+ XP_027368344.1 13 ACAACRFQRRRCGSNCVLAPYFPHDRQNQFLNAHRLFGVGRITNMLKTLDPQNRDIAASTIIYQSDMRAIDPVGGCYSLIHHLQSQIESTEAELH 107 7*********************************************************************************************9 PP DUF260 96 llkee 100 l+ ++ XP_027368344.1 108 LVLQH 112 98765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MESNLSTSNN TQACAACRFQ RRRCGSNCVL APYFPHDRQN QFLNAHRLFG VGRITNMLKT 60 LDPQNRDIAA STIIYQSDMR AIDPVGGCYS LIHHLQSQIE STEAELHLVL QHLASFKAQA 120 SSGNIINGTP QSYLESMPLE LQQQQQQYVS YNPSQEDINT WALQNSIPLS HLSIEDNQEP 180 VVDSGYDDQK PVLDFMNKIN SDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-35 | LBD family protein |