PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027368343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 23689.2 Da PI: 5.2374 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.3 | 2.6e-38 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaC+++rr+C ++C+l+ yfp++++ +f n+h+lFG+ +++++lk+l++++r++a+s+++ye+++ra dPv G+++vi++lq+q+e+++ael+ XP_027368343.1 11 ACAACRFQRRRCGTHCILSSYFPNDRQDQFINAHRLFGVGRITNMLKTLDPQNRDAAASAIIYESDMRAIDPVGGCHRVIQQLQSQIESTEAELH 105 7********************************************************************************************** PP DUF260 96 llkee 100 l++++ XP_027368343.1 106 LVRQN 110 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MESHIPRVKD ACAACRFQRR RCGTHCILSS YFPNDRQDQF INAHRLFGVG RITNMLKTLD 60 PQNRDAAASA IIYESDMRAI DPVGGCHRVI QQLQSQIEST EAELHLVRQN LAFFKAQGSS 120 GNIINAAPQP NLESMPQELQ QQQHVSYNPS QEDINMWALL NSIPLSHLSL EDNQESVVDS 180 WHDDQEPALD SMNEMNSDAG SHHQANQKEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 1e-30 | LBD family protein |