PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027364274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28686.2 Da PI: 9.0633 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.8 | 2.2e-21 | 20 | 68 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n++n q tfskRr gi+KKA+EL++LC++++av++fs+ k y + XP_027364274.1 20 KKMSNERNLQATFSKRRSGIFKKASELCTLCNVDIAVVVFSPAHKAYSF 68 5679***************************************999988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MSSSNDVVKK TKGRQKVEMK KMSNERNLQA TFSKRRSGIF KKASELCTLC NVDIAVVVFS 60 PAHKAYSFGS PNVDAVIQRY LTWAPPPPQT LQNMIEAHRS SNARDLNAQL ARLANQLEAE 120 KNRGEELSDS LKASQAQWWW ASPIEDMNRA QLEWLKGSLE ELKKHVTHKA QTLLIQSANF 180 NNNNSINHLF SGNSFLDVNN NLHPPSLLQN NYVFDGNMMH HHHFNNIGGY GPYAADAGFN 240 GSTQNMPSLD DTLFM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-47 | M-type_MADS family protein |