PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027363475.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 471aa MW: 50392.7 Da PI: 8.4968

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027363475.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.7	7.3e-12	49	75	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG+C yG+rC+++H+p XP_027363475.1 49 PGVPNCVYYMRTGFCGYGARCRYSHPP 75 5789*********************96 PP
2	zf-CCCH	40.6	4.3e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_027363475.1 96 EPPCQYYLKTGTCKFGASCKFHHPK 120 79*********************96 PP
3	zf-CCCH	36.6	7.3e-12	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_027363475.1 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	34.4	3.8e-11	297	322	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG Ck+G C+++H+ XP_027363475.1 297 PGEPECQYYLRTGDCKFGLACRYHHP 322 5799*********************8 PP
5	zf-CCCH	34.4	3.6e-11	342	366	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + +C f++++G+Ck+G++CkF H+ XP_027363475.1 342 GVQPCAFYLQNGHCKFGSTCKFDHP 366 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MDLYGRSPAR NGTNPVNQPE WHSPTTDTGL DESMWHLTLG GGESYPERPG VPNCVYYMRT 60 GFCGYGARCR YSHPPDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK 120 SEGGYLSQAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL AEQYGGASTN MRVGRPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV 240 SPVLSPGAQP AVGAASVYGV TQLSSSTSAF ARPYTLLPSS TGPSGSNLKE QLFPERPGEP 300 ECQYYLRTGD CKFGLACRYH HPCDHIVSQP LLSPVGLPLR PGVQPCAFYL QNGHCKFGST 360 CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSSLAPLT TSSEHRPELM SGFKKESFST 420 RIPSSGNSSG TSVGLIFSQG GSIPPSDVQL SSQSSAPLSS SRSSRQSGDI R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MDLYGRSPAR NGTNPVNQPE WHSPTTDTGL DESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GFCGYGARCR YSHPPDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK  120
SEGGYLSQAP LNIYGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPASAPQFY  180
QQVQSPTVPL AEQYGGASTN MRVGRPPILP GSYVQGAYGP VLLSPGVVPF PGWSHYSAPV  240
SPVLSPGAQP AVGAASVYGV TQLSSSTSAF ARPYTLLPSS TGPSGSNLKE QLFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPCDHIVSQP LLSPVGLPLR PGVQPCAFYL QNGHCKFGST  360
CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSSLAPLT TSSEHRPELM SGFKKESFST  420
RIPSSGNSSG TSVGLIFSQG GSIPPSDVQL SSQSSAPLSS SRSSRQSGDI R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	0.0	C3H family protein