PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027361298.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family LSD
Protein Properties Length: 147aa    MW: 15413 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027361298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35.3e-133054125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+ L YP GA+sV+Ca+C++V
  XP_027361298.1 30 CSGCRNFLLYPVGATSVCCAVCNAV 54
                    ************************9 PP

2zf-LSD144.82.1e-146993125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+t L+Y rGA+sV+C++C+tV
  XP_027361298.1 69 CGGCHTFLMYIRGATSVQCSCCHTV 93
                    ************************9 PP

3zf-LSD138.42.1e-12107131125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C +V
  XP_027361298.1 107 CGNCRMLLMYQYGARSVKCAVCSFV 131
                     **********************988 PP

Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    
MPVPLAPYPT PPPLPLYTPP PNGAQSQLVC SGCRNFLLYP VGATSVCCAV CNAVTAVPPP  60
GTEMAQLVCG GCHTFLMYIR GATSVQCSCC HTVNLALEAN QVAHVNCGNC RMLLMYQYGA  120
RSVKCAVCSF VTSVGASTST TEQKFST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-67LSD family protein