PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027360069.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

RAV

Protein Properties

Length: 387aa MW: 41779.9 Da PI: 9.1603

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027360069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.7	7.1e-14	71	119	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_027360069.1 71 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 119 89**9888.8*****3.....5******99***********98 PP
2	B3	99.8	1.6e-31	206	313	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+ tpsdv+k++rlv+pk++ae+h + + ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++ XP_027360069.1 206 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsvngvSASAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRST 300 89*************************9999886667799************************************************887 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++l++ + ++ XP_027360069.1 301 GPDKQLYIDWKSR 313 6888888887665 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MDAISCMDES TTTESLSISL SPTTATSSDK KTSPPPPNTL CRVGSGASAI VDPDSGGGGG 60 AEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY DIAAQRFRGK 120 DAVTNFKPLT GAAADDGEDD GEAEFLNSHS KSEIVDMLRK HTYNDELEQS KRSRGVVGRR 180 RGGGGAAGNG NSMSGACATK AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQSVNGV 240 SASAAKGVLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDTVCFHRST 300 GPDKQLYIDW KSRNVNDIGL FGPVGPVVEP VQMVRLFGVN ILKLPGSDAN ASNNNATAIT 360 GCCNGKRREM ELFSLECSKK PKIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MDAISCMDES TTTESLSISL SPTTATSSDK KTSPPPPNTL CRVGSGASAI VDPDSGGGGG  60
AEAESRKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF NEEDEAARAY DIAAQRFRGK  120
DAVTNFKPLT GAAADDGEDD GEAEFLNSHS KSEIVDMLRK HTYNDELEQS KRSRGVVGRR  180
RGGGGAAGNG NSMSGACATK AREQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQSVNGV  240
SASAAKGVLL NFEDVGGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKNLKA GDTVCFHRST  300
GPDKQLYIDW KSRNVNDIGL FGPVGPVVEP VQMVRLFGVN ILKLPGSDAN ASNNNATAIT  360
GCCNGKRREM ELFSLECSKK PKIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-128	RAV family protein