PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027357553.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29632.1 Da PI: 9.9058 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.7 | 4.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+ rqvtfskRr g+ KKA+E+SvLCda+va+i+f +g+l+eyss XP_027357553.1 9 KQIENKISRQVTFSKRRMGLRKKAHEISVLCDAQVALIVFNAKGRLFEYSS 59 78***********************************************96 PP | |||||||
2 | K-box | 88.8 | 1e-29 | 96 | 188 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ + +++ + kL ++e L++++R+++G+dL+ Ls++eLq+Le+qL+++lk+iR++Kn+++ e+i+elqkk kel+e+n L+kk++e XP_027357553.1 96 GAGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDHLSMRELQSLEHQLDTALKRIRTRKNQIMNESISELQKKAKELKEHNSILEKKIKE 188 566788899*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MGRGRVQLKQ IENKISRQVT FSKRRMGLRK KAHEISVLCD AQVALIVFNA KGRLFEYSSE 60 SRAPHLQSWE NALSAKSMEN VLERYERHAH SVQLVGAGDE SQGNWSLQCF KLTGKVEVLE 120 KNLRNFVGQD LDHLSMRELQ SLEHQLDTAL KRIRTRKNQI MNESISELQK KAKELKEHNS 180 ILEKKIKEQE KTMAEPTHCG PEILGQTCLP VLQPQKRLIP SLTLGENLQA ATIEEVVEAR 240 TVPSTSTLIP PWMLHHFTR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-79 | MIKC_MADS family protein |