PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027356811.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 22835.2 Da PI: 5.2819 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 68.2 | 1.8e-21 | 10 | 107 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C Ck +rr+ ++C++ +yfp +++ +f+n+ lFG sn+l++++++++++r++a++s++ e+ +++d +G +g +l+l++q+++ + +l+ XP_027356811.1 10 PCLICKQHRRRHDHSCIFGQYFPINRTVDFENASMLFGLSNLLRIMQDVDPQDRQHAADSILREGTTWINDIHHGPLGYVLNLRSQIQSCERQLE 104 699****************************************************************************************9998 PP DUF260 96 llk 98 ++ XP_027356811.1 105 NVN 107 876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence |
MNDENRGNYP CLICKQHRRR HDHSCIFGQY FPINRTVDFE NASMLFGLSN LLRIMQDVDP 60 QDRQHAADSI LREGTTWIND IHHGPLGYVL NLRSQIQSCE RQLENVNRLL AYCRDQANST 120 VQMGISPFAG SSAFHLPQQN TQLGDSSIQF PNLGGTEFFS SSHEKGESST IASKEKEDVD 180 EEKESMVDDK GKNITSDKDA NV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-18 | LBD family protein |