PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027355454.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25431.6 Da    PI: 10.3114
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027355454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+i+nk  rqvtfskRr g++KKAeELSvLCdae+ +i+fs tgkl++y 
  XP_027355454.1  9 KKIDNKAARQVTFSKRRRGLFKKAEELSVLCDAEIGLIVFSATGKLFDYG 58
                    68*********************************************995 PP

2K-box54.93.7e-19811691199
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + + +  +++ akL kei    + + +++G+dL+ L+l+ L+qLe+ Lek+l+++ + K++ ++++i++lqkk  el+e+nk L++k+e
  XP_027355454.1  81 SPEPQLVDNNNAKLSKEIADRSQVLSQMKGDDLQGLDLNKLRQLEKTLEKGLNRVIEIKEKRIMSEISDLQKKGIELEEKNKHLKQKIE 169
                     556677889999***************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MTRKKIKIKK IDNKAARQVT FSKRRRGLFK KAEELSVLCD AEIGLIVFSA TGKLFDYGSS  60
SMKDIITRYY RHSHVINTRP SPEPQLVDNN NAKLSKEIAD RSQVLSQMKG DDLQGLDLNK  120
LRQLEKTLEK GLNRVIEIKE KRIMSEISDL QKKGIELEEK NKHLKQKIEA MLGKAKVPSL  180
VGSNMKMQEG VSLETMNGIR SCINDLPLED GSSDTALKLG LPFFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-67MIKC_MADS family protein