PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027353335.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26410.2 Da    PI: 9.4754
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027353335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.3e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ienk+ +qvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  XP_027353335.1  9 KPIENKTSQQVTFSKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 59
                    78***********************************************96 PP

2K-box79.67.5e-2781162990
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                     ++++ + +++ e+ kL +++e ++r+ R++lG+dL++L+lkeLq+LeqqL++slk+iR++Kn+++ ++i+el k++ke  ++
  XP_027353335.1  81 ANNEPQGNWSFEYIKLTAKVEVIERNVRNFLGNDLDPLTLKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKRMKEKVKT 162
                     45556789*****************************************************************999986655 PP

Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGRVQLKP IENKTSQQVT FSKRRTGLLK KANEISVLCD AQVALIMFST KGKLFEYSSE  60
RSMEDILERY ERHTHTELGE ANNEPQGNWS FEYIKLTAKV EVIERNVRNF LGNDLDPLTL  120
KELQSLEQQL DTSLKRIRTR KNQVMNQSIS ELHKRMKEKV KTQTERPHSC PETLGQSAAT  180
LNLSSPELLP SQRLVPSLTL SGTLQGRVSL EETGEAQTAP SGNAIIPPWM LHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.16e-72MIKC_MADS family protein