PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027347742.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

MIKC_MADS

Protein Properties

Length: 358aa MW: 40195.3 Da PI: 7.6622

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027347742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.2	3.3e-21	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+ rq t++kR+ngi+KKA ELS+LCd+++ +++fs++gk XP_027347742.1 9 KRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPNGK 53 689****************************************97 PP
2	K-box	15.7	6.1e-07	110	180	10	81
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelq 81 ++++ e l ++++ L+ +i+++ + R + + +++s +++L q+e+ L +sl++iR++K+++ ++q+ lq XP_027347742.1 110 SSQTIEDLGNQARLLQTQISEINK--RLSHWTEFDKISsVEQLGQMENSLRESLNQIRTRKENIHKQQLVPLQ 180 445556666666666666666655..5556778888852788**********************999987776 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KATELSILCD IDIILLMFSP NGKPSLCIGR 60 RSNLEEVIAK FAQVTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLGNQ 120 ARLLQTQISE INKRLSHWTE FDKISSVEQL GQMENSLRES LNQIRTRKEN IHKQQLVPLQ 180 CNNQFSEMNI PFRMSAEQHL QPLSWIANGD SQNIVLPEDS NLFIHKDVEG SASSSFGSYA 240 SYLGSSSKTE ISNSGQENGV LSDMSSTAPL RLQLNGQFPY LPYNFNLLNN LKFQPSAEIS 300 PQENPVDYHV NGSFEAPSTG FDSNHHGWAS TSGPCAVTMF DEHLYAQAST TKLHFGLT

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KATELSILCD IDIILLMFSP NGKPSLCIGR  60
RSNLEEVIAK FAQVTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLGNQ  120
ARLLQTQISE INKRLSHWTE FDKISSVEQL GQMENSLRES LNQIRTRKEN IHKQQLVPLQ  180
CNNQFSEMNI PFRMSAEQHL QPLSWIANGD SQNIVLPEDS NLFIHKDVEG SASSSFGSYA  240
SYLGSSSKTE ISNSGQENGV LSDMSSTAPL RLQLNGQFPY LPYNFNLLNN LKFQPSAEIS  300
PQENPVDYHV NGSFEAPSTG FDSNHHGWAS TSGPCAVTMF DEHLYAQAST TKLHFGLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	2e-88	M-type_MADS family protein