PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027347488.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LSD | ||||||||
Protein Properties | Length: 126aa MW: 13810.8 Da PI: 8.726 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 47.7 | 2.5e-15 | 38 | 62 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA++V+C++C+tV XP_027347488.1 38 CGSCRRLLSYPRGAKHVKCSCCQTV 62 ************************9 PP | |||||||
2 | zf-LSD1 | 40.7 | 3.9e-13 | 76 | 100 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+G++ VRC++C +V XP_027347488.1 76 CGSCAVLLMYPYGSSQVRCSSCRFV 100 **********************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence |
MQNQQLHKED DDDGPPPGWQ PIPTPPPPRP SGSAQMICGS CRRLLSYPRG AKHVKCSCCQ 60 TVNIVFEADQ VGQVKCGSCA VLLMYPYGSS QVRCSSCRFV TEIGAHNRRP PWSVQQRKPT 120 PSKAGC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 4e-42 | LSD family protein |