PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027345017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | LSD | ||||||||
Protein Properties | Length: 129aa MW: 13559.8 Da PI: 7.6987 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.5 | 2.1e-13 | 12 | 36 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_027345017.1 12 CSGCRNLLVYPVGATSVCCAVCNAV 36 ************************9 PP | |||||||
2 | zf-LSD1 | 47.1 | 4e-15 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_027345017.1 51 CGGCHTLLMYIRGATSVQCSCCHTV 75 ************************9 PP | |||||||
3 | zf-LSD1 | 42.1 | 1.4e-13 | 89 | 113 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_027345017.1 89 CGNCRMLLMYQYGARSVKCAVCNFV 113 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence |
MYNECAQSQL VCSGCRNLLV YPVGATSVCC AVCNAVTAVP PPGTEMAQLV CGGCHTLLMY 60 IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY GARSVKCAVC NFVTSVGASA 120 STTEQKFST |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 7e-68 | LSD family protein |