PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027344257.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family M-type_MADS
Protein Properties Length: 335aa    MW: 38174.6 Da    PI: 7.4914
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027344257.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.8e-171150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i+ +  r++tf kR+ g++KK +E S+LC+++v+vii+++
  XP_027344257.1 11 IQKEKARKTTFQKRKSGLMKKVYEFSTLCGVDVCVIIYAP 50
                    778889********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MGRGRISMEL IQKEKARKTT FQKRKSGLMK KVYEFSTLCG VDVCVIIYAP MFDGQGLAEP  60
ETWPQDTKEV HRIIQKYHNT TSDRRPKMYD VQEYYKDRMK KVESEISKVC KEKLKIMYPT  120
WDESFNALGE EQLRMFVSML DVKLDACNQR MNMLEGDLKG KAIAESDKVE TLVPYLASSP  180
SSHLNLMQNT SQAQNFPLPV KSISDNNHLA LYPFQLSQSS QSSMLHFGQN CMQLMGKNEM  240
VDWADQVGAV TYDPKTGMLK ENGAANNQNS LPCYYNGNVQ TMQPYTIALQ TLPSHSQYEA  300
PFQIPSDPPP GFQLNGLYDS NMLQAQMFTY MHGGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-30M-type_MADS family protein