PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027343276.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20712.7 Da PI: 10.7618 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.4 | 1.7e-22 | 12 | 57 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+ELS+LC+aeva+++fs+ +k y + XP_027343276.1 12 QDANTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSF 57 67788**********************************9998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MGRRKIEIAM VQDANTRQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNKPYSFGHP 60 GVDAVAAQYL QIEPKSNEAQ TKASSKRAKN KNNMEKLNRE LAHWKEQLHE EEKMGDLHDV 120 AINQAMGTQR FELQQRFASL QRLRSSVRGR IDEIEAAESL IQLSEKPAKK AKNRVLRKRE 180 KN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-37 | M-type_MADS family protein |