PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027343275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 186aa MW: 20892 Da PI: 10.5368 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.2 | 7e-21 | 21 | 68 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+++ rqvtfskRr+g++KK +E+S+LC++++a+++fs+ +k y + XP_027343275.1 21 KIKDTNTRQVTFSKRRTGLFKKGNEISILCGVDIAIVVFSPGNKPYSF 68 699**************************************9998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence |
MAIGSKKQVQ EMGRRKIEIA KIKDTNTRQV TFSKRRTGLF KKGNEISILC GVDIAIVVFS 60 PGNKPYSFGH PGVDAVAAQY LQIEPRSNEA QSGAHNNMEK LNQELAYWKE QLHMVEKKGA 120 SHFEAINQVL GTQHFELQQR IDSLQWLRSS VRDSIGDIEA AESLILLAQK PVRGVKNRVP 180 KKKGKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-34 | M-type_MADS family protein |