PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027342375.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 705aa MW: 79052.1 Da PI: 5.5288

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027342375.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	111	135	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C ff++ G C GdrC F Hgp XP_027342375.1 111 KPVPCIFFQK-GLCLKGDRCAFLHGP 135 789*****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MVAQQPQPQP QPSSQDEALK RNTDCVYFLA SPLTCKKGNE CEYRHSEYAR VNPRDCWYWL 60 NGNCLNPKCS FRHPPLDGLL GTQTATAGGP SVPPPQIPTT TATHAPYNSG KPVPCIFFQK 120 GLCLKGDRCA FLHGPNPNTG NKAAAQVPMT SQGAENPSFK RPFGVIEKYA QERKSSQGNF 180 ARSVGGHDVK PAQQVETAPQ RNMLELEKQG PPPSAGFDNE ASRFKIASTP PLTNGPSAVA 240 QSNRLHQARV PDDHSFHSGK DGDEFLRESS PGFDVLVADE LRNSDYYHED EFGKARAQDE 300 RTLDSLDEYD LGHSANYSLA ADIDQERFRV PQGYESYDHM QEPYVWEQQQ HRKASAHLER 360 RTHHRSGSPE NAEVSDLRHH LSKRRKVNGL KSVVTHDYDP ESHSEEQGHR FFSRKDSHQL 420 PLNESSLSNR FRGRIKLPAN GGSDHTDRED RGRIRSRLSS GRSQAPPQGR VQDRIKGRLQ 480 DDERKSFRDR SMGRELMGDR SDFAGPKSLA ELKNGRNTEN KEQHLLGKRK SLRDYPQSED 540 DLQFEGPKPL SEILKEKRGV GAGAASQNGK SSYNKNEEAT ENKDHTLVSN PQNGGLSETR 600 GEIKSHLLVN EKEPKFQATD AVGRDIDNAD ATHGQSSEDG MIYDEAAEDQ EYEGDDQRDG 660 DYDYEQGDEG DYDYEQVEEG ENQEQEYMDD EDGDDFAKKI GVILT

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MVAQQPQPQP QPSSQDEALK RNTDCVYFLA SPLTCKKGNE CEYRHSEYAR VNPRDCWYWL  60
NGNCLNPKCS FRHPPLDGLL GTQTATAGGP SVPPPQIPTT TATHAPYNSG KPVPCIFFQK  120
GLCLKGDRCA FLHGPNPNTG NKAAAQVPMT SQGAENPSFK RPFGVIEKYA QERKSSQGNF  180
ARSVGGHDVK PAQQVETAPQ RNMLELEKQG PPPSAGFDNE ASRFKIASTP PLTNGPSAVA  240
QSNRLHQARV PDDHSFHSGK DGDEFLRESS PGFDVLVADE LRNSDYYHED EFGKARAQDE  300
RTLDSLDEYD LGHSANYSLA ADIDQERFRV PQGYESYDHM QEPYVWEQQQ HRKASAHLER  360
RTHHRSGSPE NAEVSDLRHH LSKRRKVNGL KSVVTHDYDP ESHSEEQGHR FFSRKDSHQL  420
PLNESSLSNR FRGRIKLPAN GGSDHTDRED RGRIRSRLSS GRSQAPPQGR VQDRIKGRLQ  480
DDERKSFRDR SMGRELMGDR SDFAGPKSLA ELKNGRNTEN KEQHLLGKRK SLRDYPQSED  540
DLQFEGPKPL SEILKEKRGV GAGAASQNGK SSYNKNEEAT ENKDHTLVSN PQNGGLSETR  600
GEIKSHLLVN EKEPKFQATD AVGRDIDNAD ATHGQSSEDG MIYDEAAEDQ EYEGDDQRDG  660
DYDYEQGDEG DYDYEQVEEG ENQEQEYMDD EDGDDFAKKI GVILT