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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027341408.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 289aa MW: 32032.3 Da PI: 5.5964 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.4 | 1.9e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r
XP_027341408.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSR 86
5789**************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 289 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNALHLKHC VQSYNVFDFL RDIVSRVPDY GHGHGHGHGH SEVGADDRAL PKRRKAVGDD 120 GNDSDEETKR SKMHELGHTG TTGRGRGRGR GRGRGRGARN VEREASHQQV ESEPCTSVHQ 180 SSKDIPNTTV AIDDPESKEL SKENTAVSEE STQSFRNIDL NANLNENEDK NTSVAAQASL 240 PEPAATEIKH EEIPGWSLSD VDKMAIDTMQ LANLGNRLQE DEEDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 144 | 153 | RGRGRGRGRG |
| 2 | 144 | 154 | RGRGRGRGRGR |
| 3 | 146 | 155 | RGRGRGRGRG |
| 4 | 146 | 156 | RGRGRGRGRGR |
| 5 | 148 | 157 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 4e-75 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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