PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027341407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 298aa MW: 33018.5 Da PI: 5.544 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 56.3 | 7.1e-18 | 19 | 95 | 22 | 98 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r XP_027341407.1 19 FKARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSR 95 569***********************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence |
MCCFCCHIVH LLDQSAHIFK ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY 60 EITLQRGAKT MNALHLKHCV QSYNVFDFLR DIVSRVPDYG HGHGHGHGHS EVGADDRALP 120 KRRKAVGDDG NDSDEETKRS KMHELGHTGT TGRGRGRGRG RGRGRGARNV EREASHQQVE 180 SEPCTSVHQS SKDIPNTTVA IDDPESKELS KENTAVSEES TQSFRNIDLN ANLNENEDKN 240 TSVAAQASLP EPAATEIKHE EIPGWSLSDV DKMAIDTMQL ANLGNRLQED EEDYDEEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 162 | RGRGRGRGRG |
2 | 153 | 163 | RGRGRGRGRGR |
3 | 155 | 164 | RGRGRGRGRG |
4 | 155 | 165 | RGRGRGRGRGR |
5 | 157 | 166 | RGRGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 9e-66 | NF-YC family protein |