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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027341404.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 320aa MW: 35500.5 Da PI: 5.8511 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 56.1 | 8.1e-18 | 41 | 117 | 22 | 98 |
NF-YC 22 PlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r
XP_027341404.1 41 FKARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVSR 117
569***********************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 320 aa Download sequence |
MTLSKMKSWI GPWQNGGKCF AEMCCFCCHI VHLLDQSAHI FKARIKKIMQ ADEDVGKIAL 60 AVPVLVSKAL ELFLQDLCDR TYEITLQRGA KTMNALHLKH CVQSYNVFDF LRDIVSRVPD 120 YGHGHGHGHG HSEVGADDRA LPKRRKAVGD DGNDSDEETK RSKMHELGHT GTTGRGRGRG 180 RGRGRGRGAR NVEREASHQQ VESEPCTSVH QSSKDIPNTT VAIDDPESKE LSKENTAVSE 240 ESTQSFRNID LNANLNENED KNTSVAAQAS LPEPAATEIK HEEIPGWSLS DVDKMAIDTM 300 QLANLGNRLQ EDEEDYDEEG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 175 | 184 | RGRGRGRGRG |
| 2 | 175 | 185 | RGRGRGRGRGR |
| 3 | 177 | 186 | RGRGRGRGRG |
| 4 | 177 | 187 | RGRGRGRGRGR |
| 5 | 179 | 188 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 2e-65 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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