PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027340925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 234aa MW: 26759.3 Da PI: 6.2297 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.6 | 4.9e-55 | 50 | 154 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+fdfl XP_027340925.1 50 QLQVFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFL 144 89******988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_027340925.1 145 VDIIPRDELK 154 *******975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MDKSEQSQQQ QQQHVMGVAP PAAFSSSAHQ LAYQQAQHFH HQQQQHQQQQ LQVFWSNQMQ 60 EIEQTIDFKN HSLPLARIKK IMKADEDVRM ISAEAPVIFA KACEMFILEL TLRSWIHTEE 120 NKRRTLQKND IAAAISRNDV FDFLVDIIPR DELKEEGLGI TKATIPIVGS PADMPYYYVP 180 PQHPVGPPGM IMGKPIDQAA LYSTQQPRPP MAFMPWPPTQ PQQEQPSQQQ QTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 3e-80 | NF-YC family protein |