PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027340924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 266aa MW: 29923.9 Da PI: 6.3427 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175.2 | 6.6e-55 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++r d+fdfl XP_027340924.1 82 QLQVFWSNQmqeIEQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFL 176 89******988889********************************************************************************* PP NF-YC 93 vdivprdelk 102 vdi+prdelk XP_027340924.1 177 VDIIPRDELK 186 *******975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
MDKSEQSQQQ QQQHVMGVAP GASQMAYSSH YQTASMMASG APAVAVPSPT QPPAAFSSSA 60 HQLAYQQAQH FHHQQQQHQQ QQLQVFWSNQ MQEIEQTIDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVI FAKACEMFIL ELTLRSWIHT EENKRRTLQK NDIAAAISRN DVFDFLVDII 180 PRDELKEEGL GITKATIPIV GSPADMPYYY VPPQHPVGPP GMIMGKPIDQ AALYSTQQPR 240 PPMAFMPWPP TQPQQEQPSQ QQQTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 161 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.1 | 6e-80 | NF-YC family protein |