PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027340531.1
Organism
Abrus precatorius
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27729.6 Da    PI: 9.0718
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027340531.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_027340531.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box95.96.5e-32921731697
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s+qqe+ kLk+++e Lqr+qR+l+GedL++Ls k+L++Le+qL++slk+iRs++++++l+q+++lq+ke+ l+e+n++Lr++
  XP_027340531.1  92 SSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKDLESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHLLSEANRSLRQR 173
                     68******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPEA NVSTREALVM FSSQQEYLKL KARYEALQRS QRNLMGEDLG  120
PLSSKDLESL ERQLDSSLKQ IRSTRTQFML DQLSDLQRKE HLLSEANRSL RQRQLEGYQI  180
NPLQLNPSVE DMGYGRHPAQ TQGDALFQPL DCEPTLQIGY QPDPVSVVTA GPSMSNYMAG  240
WLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-130MIKC_MADS family protein