PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027340277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 34009.6 Da PI: 7.4355 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.2 | 2.1e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ XP_027340277.1 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 27.8 | 4.5e-09 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ XP_027340277.1 34 ICTFYQK-GVCAYGSRCRYDHV 54 7******.*************7 PP | |||||||
3 | zf-CCCH | 18.7 | 3.1e-06 | 139 | 160 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg XP_027340277.1 139 SICS-FAAAGNCPRGEKCPHIHG 160 6788.**************9998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GVCAYGSRCR YDHVKAPRAQ 60 SSTPSSSVIE HQPLASDSAA FGNSRTTSNG FVTAADFSLS GSPYLLPHKP AWNQESEYHE 120 FLGEEDVGQS IITSPSEHSI CSFAAAGNCP RGEKCPHIHG DLCPTCGKHC LHPFRSEERE 180 EHMKSCENKQ KHLDALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCISCIRNW 240 RSSNPTLGMD VNSTLRACPI CRKLSYFVIP SVIWYSTTEE KLEIIDNYKA KLNMHIEMAV 300 LSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-127 | C3H family protein |