PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340094.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 479aa MW: 52184.4 Da PI: 8.6727

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027340094.1 90 FICEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP
2	zf-C2H2	12.2	0.00056	166	188	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_027340094.1 166 WKCDKCSKKYAVQSDWKAHSKTC 188 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MKGLVFQQQP QQLPLVEENM SNLTSASGEA SASSGNRNEI VTDYSQQYFA PPSTQTQPQV 60 KKKRNLPGNP DPEAEVVALS PKTLLATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTNKEIRKKV YVCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAVTGIGN PLHHPSPTPQ 240 PQPVNLEDMH GFPLKKEQQS FIPPWLAPPT VDLSSSSSSF FTTPRLDQVQ DHENPNPRLG 300 PTLPAFQPAP SSPHMSATAL LQKAAQMGAT MSKTGSMIRT HQHTHVSADS SFNLSSRDDQ 360 IMTTTNHALA PYAHKAASAG DATGGGSGGG GVPSSLLHHV IDSFSSPFEG TSFEDAFAGH 420 GAIAKTTAAD DGSAGGSEGL TRDFLGLRPL SHTDILNIAG IGNCMNSSQH NQSQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MKGLVFQQQP QQLPLVEENM SNLTSASGEA SASSGNRNEI VTDYSQQYFA PPSTQTQPQV  60
KKKRNLPGNP DPEAEVVALS PKTLLATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTNKEIRKKV YVCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAVTGIGN PLHHPSPTPQ  240
PQPVNLEDMH GFPLKKEQQS FIPPWLAPPT VDLSSSSSSF FTTPRLDQVQ DHENPNPRLG  300
PTLPAFQPAP SSPHMSATAL LQKAAQMGAT MSKTGSMIRT HQHTHVSADS SFNLSSRDDQ  360
IMTTTNHALA PYAHKAASAG DATGGGSGGG GVPSSLLHHV IDSFSSPFEG TSFEDAFAGH  420
GAIAKTTAAD DGSAGGSEGL TRDFLGLRPL SHTDILNIAG IGNCMNSSQH NQSQKPWQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	129	KLKQRTNKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-111	C2H2 family protein