PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027339466.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
Family MIKC_MADS
Protein Properties Length: 178aa    MW: 20683.6 Da    PI: 9.9978
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027339466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.62.2e-301059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_027339466.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFAS 59
                    8***********************************************86 PP

2K-box79.96.2e-2779159686
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                       + +e+++++l+qe a+L k+ie L+ ++R+llGe+L+s+sl+eLqq+e+qLe+s++++R++Kn+++++qie+l++k  +
  XP_027339466.1  79 IHRSDEQNMQHLKQETANLMKKIELLEASKRKLLGEGLGSCSLEELQQIEEQLERSVSSVRARKNQVYKDQIEQLKEKDPQ 159
                     344899***********************************************************************9865 PP

Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFASS  60
SMQETIERYR RHNRSAQTIH RSDEQNMQHL KQETANLMKK IELLEASKRK LLGEGLGSCS  120
LEELQQIEEQ LERSVSSVRA RKNQVYKDQI EQLKEKDPQK DASVYFFSKE IEGKNPTC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-68MIKC_MADS family protein